Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
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Genetic Variation
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Gene: Snx25 ENSRNOG00000011116

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Description

sorting nexin 25 [Source:RGD Symbol;Acc:1310150]

Gene Synonyms

LOC306471

Location

Primary_assembly 16: 52,858,532-52,971,008 forward strand.

GRCr8:CM070406.1

About this gene

This gene has 4 transcripts (splice variants), 205 orthologues, 3 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000099611.2	Snx25-202	3616	986aa	ENSRNOP00000081215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZS17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000106385.2	Snx25-203	3454	932aa	ENSRNOP00000089441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ABR0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000155067.1	Snx25-204	3187	840aa	ENSRNOP00000103625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JPP4	-
ENSRNOT00000014828.9	Snx25-201	3142	893aa	ENSRNOP00000014828.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M998	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data