Summary
- Splice variants
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Sequence
- Secondary Structure
Comparative Genomics
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- GO: Anatomical entity
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Gene: Htt ENSRNOG00000011073

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Description

huntingtin [Source:RGD Symbol;Acc:68337]

Gene Synonyms

Hd, Hdh

Location

Primary_assembly 14: 80,070,456-80,219,668 reverse strand.

GRCr8:CM070404.1

About this gene

This gene has 3 transcripts (splice variants), 200 orthologues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000058166.5	Htt-201	13255	3142aa	ENSRNOP00000054971.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V9P7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000095135.2	Htt-202	13141	3104aa	ENSRNOP00000093649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AXC3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000099389.2	Htt-203	13123	3091aa	ENSRNOP00000085805.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A113	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data