Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
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External references
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Gene: Tpbg ENSRNOG00000010694

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Description

trophoblast glycoprotein [Source:RGD Symbol;Acc:621453]

Gene Synonyms

5T4, MGC93332, WAIF1

Location

Primary_assembly 8: 95,629,267-95,678,394 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 6 transcripts (splice variants), 184 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000130631.1	Tpbg-204	4672	426aa	ENSRNOP00000101915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1T6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000139740.1	Tpbg-205	4065	426aa	ENSRNOP00000100654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1T6	-
ENSRNOT00000153056.1	Tpbg-206	3957	426aa	ENSRNOP00000099969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1T6	-
ENSRNOT00000104677.2	Tpbg-203	3868	426aa	ENSRNOP00000085521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1T6 Q5PQV5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000014326.4	Tpbg-201	3725	426aa	ENSRNOP00000014326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1T6 Q5PQV5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000089491.3	Tpbg-202	3276	426aa	ENSRNOP00000075124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1T6 Q5PQV5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data