Gene: Col6a5 ENSRNOG00000010663

Description

collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]

Gene Synonyms

LOC315980, LOC501047, RGD1307220, RGD1565804

Location

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 144 orthologues, 14 paralogues and is associated with 3 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000112307.2	Col6a5-203	9113	2635aa	ENSRNOP00000081276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000082992.3	Col6a5-202	9099	2635aa	ENSRNOP00000068883.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JTX7	-
ENSRNOT00000038160.6	Col6a5-201	8008	2605aa	ENSRNOP00000037852.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LZF4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.