Gene: Sec13 ENSRNOG00000010628

Description

SEC13 homolog, nuclear pore and COPII coat complex component [Source:RGD Symbol;Acc:1359555]

Gene Synonyms

MGC105923, Sec13l1

Location

Primary_assembly 4: 148,433,349-148,446,755 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 3 transcripts (splice variants), 225 orthologues, 2 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000014377.6	Sec13-201	1289	322aa	ENSRNOP00000014377.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q6Q3 A6IBU1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000114125.2	Sec13-203	1941	295aa	ENSRNOP00000077650.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XFW8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000106299.2	Sec13-202	1213	314aa	ENSRNOP00000091682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ATA8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,