Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cald1 ENSRNOG00000010233

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Description

caldesmon 1 [Source:RGD Symbol;Acc:2256]

Gene Synonyms

CDM, l-Cad

Location

Primary_assembly 4: 64,233,171-64,414,085 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 6 transcripts (splice variants), 237 orthologues, 1 paralogue and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115634.2	Cald1-206	4741	750aa	ENSRNOP00000085217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GCL3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000086377.3	Cald1-202	4693	734aa	ENSRNOP00000068857.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JTV2	-
ENSRNOT00000115054.2	Cald1-205	4635	744aa	ENSRNOP00000093810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMH6	-
ENSRNOT00000041264.5	Cald1-201	4271	608aa	ENSRNOP00000043767.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V9E3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000102454.2	Cald1-203	1908	527aa	ENSRNOP00000087934.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6T4	-
ENSRNOT00000112793.2	Cald1-204	1743	580aa	ENSRNOP00000086440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GEY4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data