Summary
- Splice variants
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Sequence
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Comparative Genomics
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- Orthologues
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Gene: Clec4a ENSRNOG00000010045

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Description

C-type lectin domain family 4, member A [Source:RGD Symbol;Acc:1359662]

Gene Synonyms

Clecsf6, Dcir1

Location

Primary_assembly 4: 158,100,615-158,118,094 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 2 transcripts (splice variants), 715 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000039855.6	Clec4a-201	888	259aa	ENSRNOP00000037071.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LRI3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000077840.4	Clec4a-202	831	240aa	ENSRNOP00000072877.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K425	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data