Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ubp1 ENSRNOG00000009729

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Description

upstream binding protein 1 [Source:RGD Symbol;Acc:1564700]

Gene Synonyms

LOC301038, RGD1564700

Location

Primary_assembly 8: 122,748,049-122,793,824 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 212 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000112819.2	Ubp1-202	3745	629aa	ENSRNOP00000086807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GFC7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000151156.1	Ubp1-203	3499	540aa	ENSRNOP00000102156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000013050.8	Ubp1-201	3479	593aa	ENSRNOP00000013050.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A030	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data