Summary
- Splice variants
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- Secondary Structure
Comparative Genomics
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Gene: Tank ENSRNOG00000008859

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Description

TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]

Location

Primary_assembly 3: 66,537,175-66,598,864 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 3 transcripts (splice variants), 186 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000116799.2	Tank-203	1998	417aa	ENSRNOP00000092979.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8YHZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000081682.3	Tank-202	2129	413aa	ENSRNOP00000071679.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K130	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000011794.8	Tank-201	2043	406aa	ENSRNOP00000011794.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M101	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data