Summary
- Splice variants
- Transcript comparison
- Gene alleles
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- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: Etl4 ENSRNOG00000008666

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Description

enhancer trap locus 4 [Source:RGD Symbol;Acc:1563437]

Gene Synonyms

LOC291356, LOC681362, RGD1563437

Location

Primary_assembly 17: 87,403,819-88,213,158 forward strand.

GRCr8:CM070407.1

About this gene

This gene has 8 transcripts (splice variants), 220 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000114046.2	Etl4-206	7482	1992aa	ENSRNOP00000086860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GEH8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000116431.2	Etl4-207	7368	1940aa	ENSRNOP00000077128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YBN1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000096762.2	Etl4-203	7263	1905aa	ENSRNOP00000086839.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6M2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000073718.5	Etl4-201	7169	1954aa	ENSRNOP00000064638.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R5H1	-
ENSRNOT00000096341.2	Etl4-202	5598	1350aa	ENSRNOP00000085969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4F8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000107420.2	Etl4-205	5583	1345aa	ENSRNOP00000087978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A455	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000102713.2	Etl4-204	2802	933aa	ENSRNOP00000092656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHF5	-
ENSRNOT00000171442.1	Etl4-208	1789	480aa	ENSRNOP00000107349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data