Gene: Vps39 ENSRNOG00000008316

Description

VPS39 subunit of HOPS complex [Source:RGD Symbol;Acc:1304858]

Gene Synonyms

LOC362199, Vam6

Location

Primary_assembly 3: 127,721,076-127,758,768 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues, 1 paralogue and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000085132.3	Vps39-202	4543	884aa	ENSRNOP00000075259.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KA50	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000011155.7	Vps39-201	4510	873aa	ENSRNOP00000011155.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PT04	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119603.2	Vps39-204	4314	851aa	ENSRNOP00000086938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A3C4	-
ENSRNOT00000105454.2	Vps39-203	1989	459aa	ENSRNOP00000095308.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AL66	-