Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cd46 ENSRNOG00000008193

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Description

CD46 molecule [Source:RGD Symbol;Acc:3061]

Gene Synonyms

Mcp

Location

Primary_assembly 13: 109,103,235-109,188,869 reverse strand.

GRCr8:CM070403.1

About this gene

This gene has 9 transcripts (splice variants), 88 orthologues, 37 paralogues and is associated with 36 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000100405.2	Cd46-205	2555	728aa	ENSRNOP00000091054.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AC67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000107463.2	Cd46-206	3398	713aa	ENSRNOP00000080824.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZTV7	-
ENSRNOT00000165602.1	Cd46-209	3038	593aa	ENSRNOP00000101783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000120085.2	Cd46-208	2831	524aa	ENSRNOP00000097736.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GMN2	-
ENSRNOT00000118720.2	Cd46-207	2825	532aa	ENSRNOP00000076787.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y5K8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000010799.8	Cd46-201	2088	559aa	ENSRNOP00000010798.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UIA6 Q63135	-
ENSRNOT00000099211.2	Cd46-204	2081	548aa	ENSRNOP00000082131.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZT27	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000084320.3	Cd46-203	1976	513aa	ENSRNOP00000072622.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2R7U2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000079549.3	Cd46-202	1882	514aa	ENSRNOP00000074390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K7Y0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data