Gene: Smtnl1 ENSRNOG00000007516

Description

smoothelin-like 1 [Source:RGD Symbol;Acc:1311701]

Gene Synonyms

LOC311167, RGD1311701

Location

Primary_assembly 3: 90,295,682-90,307,752 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 97 orthologues, 8 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000009903.9	Smtnl1-201	1615	470aa	ENSRNOP00000009903.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZWP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000114989.2	Smtnl1-203	1612	462aa	ENSRNOP00000080077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZP11	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000102834.2	Smtnl1-202	1594	463aa	ENSRNOP00000095023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALV6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000173109.1	Smtnl1-204	1485	439aa	ENSRNOP00000109939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-