Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
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Gene: Rpn2 ENSRNOG00000007492

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Description

ribophorin II [Source:RGD Symbol;Acc:62075]

Gene Synonyms

RPN-II

Location

Primary_assembly 3: 166,362,049-166,409,922 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000068135.4	Rpn2-201	2951	647aa	ENSRNOP00000063207.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QVV5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000118622.2	Rpn2-205	2890	631aa	ENSRNOP00000076455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JWR7 P25235	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000118283.2	Rpn2-204	2855	615aa	ENSRNOP00000091344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ABV8	-
ENSRNOT00000105602.2	Rpn2-203	2838	618aa	ENSRNOP00000091490.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AC60	-
ENSRNOT00000091273.3	Rpn2-202	1863	620aa	ENSRNOP00000074071.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K757	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data