Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Mtdh ENSRNOG00000006870

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Description

metadherin [Source:RGD Symbol;Acc:620992]

Location

Primary_assembly 7: 65,306,400-65,364,413 forward strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 4 transcripts (splice variants), 129 orthologues, 1 paralogue and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000096827.1	Mtdh-202	4777	708aa	ENSRNOP00000077252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y7K9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000108860.1	Mtdh-204	4711	686aa	ENSRNOP00000078672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZLQ8	-
ENSRNOT00000105848.1	Mtdh-203	4678	675aa	ENSRNOP00000088806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJK9	-
ENSRNOT00000009989.4	Mtdh-201	3783	611aa	ENSRNOP00000009989.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Z1W6-1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data