Summary
- Splice variants
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- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: Thy1 ENSRNOG00000006604

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Description

Thy-1 cell surface antigen [Source:RGD Symbol;Acc:3860]

Gene Synonyms

CD7, CD90

Location

Primary_assembly 8: 53,286,148-53,291,540 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 126 orthologues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000008685.5	Thy1-201	1965	222aa	ENSRNOP00000008685.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q3U4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000095277.2	Thy1-202	1741	161aa	ENSRNOP00000079974.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZPP2 A6J3V0 P01830	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000172486.1	Thy1-203	707	37aa	ENSRNOP00000111532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data