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Gene: Nup107 ENSRNOG00000006541

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Description

nucleoporin 107 [Source:RGD Symbol;Acc:621160]

Gene Synonyms

p105

Location

Primary_assembly 7: 55,239,613-55,285,234 reverse strand.

GRCr8:CM070397.1

About this gene

This gene has 5 transcripts (splice variants), 205 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000133072.1	Nup107-203	3338	967aa	ENSRNOP00000100946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000147605.1	Nup107-205	3266	943aa	ENSRNOP00000104443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000106167.2	Nup107-202	3096	925aa	ENSRNOP00000096708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQT4 A6IGT7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000009203.8	Nup107-201	3040	934aa	ENSRNOP00000009203.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LSL2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000140409.1	Nup107-204	2983	915aa	ENSRNOP00000104751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data