Gene: Shmt1 ENSRNOG00000005275

Description

serine hydroxymethyltransferase 1 [Source:RGD Symbol;Acc:1312011]

Gene Synonyms

LOC287379, LRRGT00032, Shmt, mShmt

Location

Primary_assembly 10: 45,960,434-45,997,326 reverse strand.

GRCr8:CM070400.1

About this gene

This gene has 3 transcripts (splice variants), 218 orthologues, 1 paralogue and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000007092.7	Shmt1-201	2284	681aa	ENSRNOP00000007092.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TXG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000156060.1	Shmt1-203	1901	478aa	ENSRNOP00000105844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000105169.2	Shmt1-202	1672	462aa	ENSRNOP00000078307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKU9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,