Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ddx39a ENSRNOG00000004373

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Description

DExD-box helicase 39A [Source:RGD Symbol;Acc:619920]

Gene Synonyms

Ddx39, Ddxl, MGC105369

Location

Primary_assembly 19: 41,322,836-41,332,306 reverse strand.

GRCr8:CM070409.1

About this gene

This gene has 6 transcripts (splice variants), 285 orthologues and 39 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045974.6	Ddx39a-201	1770	480aa	ENSRNOP00000040666.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QK42	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000090312.3	Ddx39a-202	1715	427aa	ENSRNOP00000068949.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IYD0 Q5U216	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000116099.2	Ddx39a-205	1644	446aa	ENSRNOP00000082759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVU6	-
ENSRNOT00000096006.2	Ddx39a-203	1629	441aa	ENSRNOP00000086544.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A2E4	-
ENSRNOT00000110443.2	Ddx39a-204	1521	405aa	ENSRNOP00000077493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKB3	-
ENSRNOT00000149968.1	Ddx39a-206	997	250aa	ENSRNOP00000110804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data