Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Pkn1 ENSRNOG00000004131

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Description

protein kinase N1 [Source:RGD Symbol;Acc:69308]

Gene Synonyms

PAK-1, Prkcl1

Location

Primary_assembly 19: 41,346,860-41,378,395 forward strand.

GRCr8:CM070409.1

About this gene

This gene has 4 transcripts (splice variants), 285 orthologues, 9 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106468.2	Pkn1-202	2964	951aa	ENSRNOP00000086181.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GEN7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000116583.2	Pkn1-203	6597	946aa	ENSRNOP00000082261.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G981 A6IYD2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000169510.1	Pkn1-204	6482	948aa	ENSRNOP00000103414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000005770.6	Pkn1-201	2895	887aa	ENSRNOP00000005770.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q63433	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data