Summary
- Splice variants
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- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: Sema6a ENSRNOG00000004033

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Description

semaphorin 6A [Source:RGD Symbol;Acc:1305493]

Gene Synonyms

LOC361324

Location

Primary_assembly 18: 42,237,228-42,358,540 reverse strand.

GRCr8:CM070408.1

About this gene

This gene has 5 transcripts (splice variants), 216 orthologues, 19 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000005446.7	Sema6a-201	7146	1048aa	ENSRNOP00000005446.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZAX7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000005476.10	Sema6a-202	7095	1031aa	ENSRNOP00000005476.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IWY3 D3ZAG0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000150263.1	Sema6a-205	6930	976aa	ENSRNOP00000099981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000115179.2	Sema6a-203	4952	993aa	ENSRNOP00000082708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYF8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000136674.1	Sema6a-204	4913	980aa	ENSRNOP00000111735.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data