Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
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Gene: Acmsd ENSRNOG00000003884

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Description

aminocarboxymuconate semialdehyde decarboxylase [Source:RGD Symbol;Acc:620868]

Location

Primary_assembly 13: 41,752,875-41,798,427 forward strand.

GRCr8:CM070403.1

About this gene

This gene has 3 transcripts (splice variants), 196 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109111.2	Acmsd-203	2702	336aa	ENSRNOP00000081182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8R5M5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000097274.2	Acmsd-202	2690	332aa	ENSRNOP00000079363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZMP7	-
ENSRNOT00000005206.8	Acmsd-201	2619	333aa	ENSRNOP00000005206.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8WFI2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data