Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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Pathway
Molecular interactions
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Gene: Scoc ENSRNOG00000003853

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Description

short coiled-coil protein [Source:RGD Symbol;Acc:1311860]

Gene Synonyms

LOC364981

Location

Primary_assembly 19: 41,564,112-41,597,912 forward strand.

GRCr8:CM070409.1

About this gene

This gene has 5 transcripts (splice variants) and 280 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000116209.2	Scoc-203	2096	172aa	ENSRNOP00000088593.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GGD9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000161117.1	Scoc-205	5150	150aa	ENSRNOP00000100448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AB56	-
ENSRNOT00000152691.1	Scoc-204	5092	82aa	ENSRNOP00000112226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IYF1	-
ENSRNOT00000005124.9	Scoc-201	1945	125aa	ENSRNOP00000005124.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q216 A6IYE5	-
ENSRNOT00000115332.2	Scoc-202	1075	47aa	ENSRNOP00000094199.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AML3 A0A8I6GLI5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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