Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Slit2 ENSRNOG00000003840

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Description

slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]

Gene Synonyms

slit-2

Location

Primary_assembly 14: 66,829,661-67,167,146 reverse strand.

GRCr8:CM070404.1

About this gene

This gene has 4 transcripts (splice variants), 194 orthologues, 24 paralogues and is associated with 25 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101023.2	Slit2-204	7186	1542aa	ENSRNOP00000089142.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6K5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000098728.2	Slit2-203	7174	1538aa	ENSRNOP00000094520.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMD5	-
ENSRNOT00000081601.3	Slit2-202	7165	1535aa	ENSRNOP00000075258.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KA49	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000005477.9	Slit2-201	7162	1534aa	ENSRNOP00000005477.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MA79	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data