Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Col5a2 ENSRNOG00000003736

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Description

collagen type V alpha 2 chain [Source:RGD Symbol;Acc:70921]

Location

Primary_assembly 9: 54,940,764-55,090,150 reverse strand.

GRCr8:CM070399.1

About this gene

This gene has 4 transcripts (splice variants), 220 orthologues, 36 paralogues and is associated with 26 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000129308.1	Col5a2-204	6075	1501aa	ENSRNOP00000106883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000005073.9	Col5a2-201	6069	1499aa	ENSRNOP00000005073.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LQ00	-
ENSRNOT00000099326.2	Col5a2-202	6066	1498aa	ENSRNOP00000086427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GEX8 A6INT3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000114323.2	Col5a2-203	6063	1497aa	ENSRNOP00000093325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AII1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data