Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Sqstm1 ENSRNOG00000003147

.

Description

sequestosome 1 [Source:RGD Symbol;Acc:69287]

Gene Synonyms

Osi, ZIP, ZIP3

Location

Primary_assembly 10: 35,026,598-35,037,750 reverse strand.

GRCr8:CM070400.1

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and is associated with 22 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000059255.7	Sqstm1-202	2093	473aa	ENSRNOP00000056021.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O08623-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000098202.2	Sqstm1-203	2307	423aa	ENSRNOP00000091620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AET9	-
ENSRNOT00000004308.8	Sqstm1-201	2012	446aa	ENSRNOP00000004308.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O08623-2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data