Summary
- Splice variants
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Sequence
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Comparative Genomics
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Gene: Rpa1 ENSRNOG00000003123

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Description

replication protein A1 [Source:RGD Symbol;Acc:1307376]

Gene Synonyms

Cb1-727, LOC287524

Location

Primary_assembly 10: 60,647,185-60,698,279 reverse strand.

GRCr8:CM070400.1

About this gene

This gene has 4 transcripts (splice variants), 270 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000092728.3	Rpa1-203	3116	680aa	ENSRNOP00000079958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7TP21	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000116502.2	Rpa1-204	2771	578aa	ENSRNOP00000078632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZL77	-
ENSRNOT00000090262.3	Rpa1-202	2753	603aa	ENSRNOP00000075516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAT3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000004229.5	Rpa1-201	1809	602aa	ENSRNOP00000004229.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7FI87	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data