Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Prg4 ENSRNOG00000002385

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Description

proteoglycan 4 [Source:RGD Symbol;Acc:1308976]

Gene Synonyms

LOC289104

Location

Primary_assembly 13: 65,037,363-65,054,508 reverse strand.

GRCr8:CM070403.1

About this gene

This gene has 4 transcripts (splice variants), 248 orthologues, 1 paralogue and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000068148.5	Prg4-201	4233	1275aa	ENSRNOP00000059900.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LRA5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000126171.1	Prg4-203	4113	1235aa	ENSRNOP00000112824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000154575.1	Prg4-204	4032	1194aa	ENSRNOP00000103368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000113690.2	Prg4-202	3969	1187aa	ENSRNOP00000086666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1N7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data