Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
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Gene: Uso1 ENSRNOG00000002301

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Description

USO1 vesicle transport factor [Source:RGD Symbol;Acc:621604]

Gene Synonyms

TAP, Vdp

Location

Primary_assembly 14: 16,150,923-16,216,389 reverse strand.

GRCr8:CM070404.1

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000003277.6	Uso1-201	3866	966aa	ENSRNOP00000003277.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q065	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000103892.2	Uso1-202	3845	959aa	ENSRNOP00000087182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A7H7 A6KKA4 P41542	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000127920.1	Uso1-204	3746	926aa	ENSRNOP00000109038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000110714.2	Uso1-203	3659	897aa	ENSRNOP00000077073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y5W3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data