Gene: Sec31a ENSRNOG00000002251

Description

SEC31 homolog A, COPII coat complex component [Source:RGD Symbol;Acc:620233]

Gene Synonyms

MGC93320, Sec31l1, VAP1

Location

Primary_assembly 14: 9,518,648-9,573,585 forward strand.

GRCr8:CM070404.1

About this gene

This gene has 6 transcripts (splice variants), 204 orthologues, 1 paralogue and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000003072.7	Sec31a-201	4423	1249aa	ENSRNOP00000003072.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K602 G3V699	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000033489.7	Sec31a-202	4426	1218aa	ENSRNOP00000038196.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QIX3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000091367.3	Sec31a-203	4388	1231aa	ENSRNOP00000071621.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K0X9 A6K603	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000097169.2	Sec31a-204	4354	1205aa	ENSRNOP00000079808.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZP55	-
ENSRNOT00000153513.1	Sec31a-206	4329	997aa	ENSRNOP00000109931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000116260.2	Sec31a-205	4315	1192aa	ENSRNOP00000085826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GED0	-