Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
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Gene: Nup54 ENSRNOG00000002247

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Description

nucleoporin 54 [Source:RGD Symbol;Acc:619926]

Location

Primary_assembly 14: 15,901,991-15,920,334 forward strand.

GRCr8:CM070404.1

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000155411.1	Nup54-203	2405	564aa	ENSRNOP00000106209.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000003070.7	Nup54-201	2299	510aa	ENSRNOP00000003070.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KK71 P70582	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000118729.2	Nup54-202	2121	487aa	ENSRNOP00000081526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZV73	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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