Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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Molecular interactions
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ID History
- Gene history

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Gene: Tmtc1 ENSRNOG00000001854

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Description

transmembrane O-mannosyltransferase targeting cadherins 1 [Source:RGD Symbol;Acc:1564868]

Gene Synonyms

LOC362465, RGD1564868

Location

Primary_assembly 4: 182,878,802-183,102,532 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 7 transcripts (splice variants), 204 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000144032.1	Tmtc1-203	4029	942aa	ENSRNOP00000100951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000114970.2	Tmtc1-202	3915	904aa	ENSRNOP00000084348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZZ24	-
ENSRNOT00000155280.1	Tmtc1-205	3885	894aa	ENSRNOP00000111384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000160308.1	Tmtc1-207	3825	874aa	ENSRNOP00000109563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000064320.6	Tmtc1-201	3650	881aa	ENSRNOP00000061944.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A2M3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000158656.1	Tmtc1-206	2994	893aa	ENSRNOP00000103955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000151996.1	Tmtc1-204	2942	908aa	ENSRNOP00000107854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data