Summary
- Splice variants
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Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Phenotypes
Genetic Variation
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Gene: Ttc3 ENSRNOG00000001682

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Description

tetratricopeptide repeat domain 3 [Source:RGD Symbol;Acc:1308654]

Gene Synonyms

LOC360702

Location

Primary_assembly 11: 47,158,792-47,258,418 forward strand.

GRCr8:CM070401.1

About this gene

This gene has 4 transcripts (splice variants), 248 orthologues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000065600.5	Ttc3-201	7177	2000aa	ENSRNOP00000059742.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QUD9 A6KPW4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000113628.2	Ttc3-203	7337	1991aa	ENSRNOP00000088126.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4G2	-
ENSRNOT00000105771.2	Ttc3-202	6104	1947aa	ENSRNOP00000077352.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y675	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000139699.1	Ttc3-204	2134	319aa	ENSRNOP00000103098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data