Gene: Grik1 ENSRNOG00000001575

Description

glutamate ionotropic receptor kainate type subunit 1 [Source:RGD Symbol;Acc:2732]

Gene Synonyms

GluK1, GluR-5, GluR5

Location

Primary_assembly 11: 40,655,975-41,056,517 reverse strand.

GRCr8:CM070401.1

About this gene

This gene has 7 transcripts (splice variants), 310 orthologues, 17 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000050073.7	Grik1-202	3327	949aa	ENSRNOP00000045594.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JL86 F1M7M9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000147508.1	Grik1-207	3912	903aa	ENSRNOP00000105903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JL88	-
ENSRNOT00000042581.7	Grik1-201	3822	873aa	ENSRNOP00000050263.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140TAG6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000051060.7	Grik1-203	3242	920aa	ENSRNOP00000046164.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140TAF9 A6JL85	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000085629.3	Grik1-205	3056	925aa	ENSRNOP00000069424.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVC0	-
ENSRNOT00000081066.3	Grik1-204	2878	871aa	ENSRNOP00000074448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K830 A6JL87	-
ENSRNOT00000100916.2	Grik1-206	2837	855aa	ENSRNOP00000078137.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y1Z7	-