Gene: Gtf2ird1 ENSRNOG00000001478

Description

GTF2I repeat domain containing 1 [Source:RGD Symbol;Acc:620856]

Gene Synonyms

Gtf3, LOC100912262

Location

Primary_assembly 12: 27,890,675-27,997,494 forward strand.

GRCr8:CM070402.1

About this gene

This gene has 8 transcripts (splice variants), 195 orthologues, 13 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000085696.3	Gtf2ird1-203	3694	1105aa	ENSRNOP00000073591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K5X2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000101585.2	Gtf2ird1-205	3623	1078aa	ENSRNOP00000079734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZN74	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000087656.3	Gtf2ird1-204	3589	1073aa	ENSRNOP00000069637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVV8 A6J0J2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000110226.2	Gtf2ird1-207	3566	1059aa	ENSRNOP00000085931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A198	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000109247.2	Gtf2ird1-206	3385	1002aa	ENSRNOP00000090423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAS8	-
ENSRNOT00000112342.2	Gtf2ird1-208	3295	975aa	ENSRNOP00000093457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GKN8	-
ENSRNOT00000002006.6	Gtf2ird1-201	3280	970aa	ENSRNOP00000002006.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V664	-
ENSRNOT00000079392.3	Gtf2ird1-202	3199	943aa	ENSRNOP00000075217.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KA15	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Gtf2ird1 ENSRNOG00000001478

Strains

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Gene: Gtf2ird1 ENSRNOG00000001478

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