Summary
- Splice variants
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Comparative Genomics
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Gene: Vps29 ENSRNOG00000001274

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Description

VPS29 retromer complex component [Source:RGD Symbol;Acc:1308332]

Gene Synonyms

LOC288666

Location

Primary_assembly 12: 39,869,688-39,878,848 reverse strand.

GRCr8:CM070402.1

About this gene

This gene has 4 transcripts (splice variants) and 238 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000088905.3	Vps29-203	1094	188aa	ENSRNOP00000074640.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2RZ78-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000078683.3	Vps29-202	1287	186aa	ENSRNOP00000068822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JTS3	-
ENSRNOT00000099825.2	Vps29-204	1287	186aa	ENSRNOP00000097672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AUQ8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000001717.8	Vps29-201	359	91aa	ENSRNOP00000001717.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q0U7	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data