Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Sgsm1 ENSRNOG00000000708

.

Description

small G protein signaling modulator 1 [Source:RGD Symbol;Acc:1308178]

Gene Synonyms

LOC288743, Rutbc2

Location

Primary_assembly 12: 48,981,693-49,046,921 forward strand.

GRCr8:CM070402.1

About this gene

This gene has 5 transcripts (splice variants), 274 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106588.2	Sgsm1-203	5307	1148aa	ENSRNOP00000086971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6E1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000122487.1	Sgsm1-204	5404	1135aa	ENSRNOP00000098915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000138948.1	Sgsm1-205	5226	1103aa	ENSRNOP00000100347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000094880.2	Sgsm1-202	5199	1081aa	ENSRNOP00000084191.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYM5	-
ENSRNOT00000000898.9	Sgsm1-201	4981	1050aa	ENSRNOP00000000898.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZAS2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data