Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
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External references
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ID History
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Gene: Begain ENSRNOG00000004650

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Description

brain-enriched guanylate kinase-associated [Source:RGD Symbol;Acc:708347]

Location

Primary_assembly 6: 127,943,651-127,979,841 reverse strand.

mRatBN7.2:CM026979.1

About this gene

This gene has 4 transcripts (splice variants), 116 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095766.1	Begain-203	3339	804aa	ENSRNOP00000088091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AA22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000041903.6	Begain-201	2803	605aa	ENSRNOP00000049699.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O88881-2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000082216.2	Begain-202	2793	611aa	ENSRNOP00000071412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K0E5 O88881	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000117298.1	Begain-204	2742	605aa	ENSRNOP00000086294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GDW4	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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