Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
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Ontologies
Phenotypes
Genetic Variation
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Gene expression
Pathway
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ID History
- Gene history

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Gene: Vps52 ENSRNOG00000000470

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Description

VPS52 subunit of GARP complex [Source:RGD Symbol;Acc:3618]

Gene Synonyms

Are1, Sacm2l

Location

Primary_assembly 20: 4,860,843-4,931,665 reverse strand.

mRatBN7.2:CM026993.1

About this gene

This gene has 3 transcripts (splice variants), 199 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000000549.6	Vps52-201	3167	723aa	ENSRNOP00000000549.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GUV2 O55166	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000096948.1	Vps52-202	4505	722aa	ENSRNOP00000087040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A724	-
ENSRNOT00000107087.1	Vps52-203	3036	715aa	ENSRNOP00000080803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G757	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data