Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SPATA13 ENSPTRG00000032583

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Description

spermatosis associated 13 [Source:UniProtKB Gene Name;Acc:A0A2I3T8Q7]

Location

Chromosome 13: 8,862,929-8,946,681 forward strand.

Pan_tro_3.0:CM000327.3

About this gene

This gene has 5 transcripts (splice variants), 201 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000087167.1	SPATA13-201	8230	1279aa	ENSPTRP00000087649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7BJ16	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000067983.3	SPATA13-202	6885	574aa	ENSPTRP00000059578.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RDZ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000082283.1	SPATA13-204	1785	594aa	ENSPTRP00000075754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SFE1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000079658.1	SPATA13-203	1539	512aa	ENSPTRP00000086288.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TAN5	-
ENSPTRT00000087578.1	SPATA13-205	1530	509aa	ENSPTRP00000085573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T8Q7	-

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Summary

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