Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RBM12 ENSPTRG00000040708

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Description

copine 1 [Source:UniProtKB Gene Name;Acc:K7DU49]

Location

Chromosome 20: 37,067,624-37,106,526 reverse strand.

Pan_tro_3.0:CM000334.4

About this gene

This gene has 6 transcripts (splice variants), 130 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000024990.3	RBM12-206	4089	954aa	ENSPTRP00000023069.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QK97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000065839.3	RBM12-201	1812	537aa	ENSPTRP00000057407.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7AA11	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000099622.1	RBM12-205	1782	593aa	ENSPTRP00000085505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RQB4	-
ENSPTRT00000097543.1	RBM12-204	1722	573aa	ENSPTRP00000092468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTE2	-
ENSPTRT00000078104.1	RBM12-202	1686	561aa	ENSPTRP00000064438.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2E4	-
ENSPTRT00000081037.1	RBM12-203	1629	542aa	ENSPTRP00000074000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DU49	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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