Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SCMH1 ENSPTRG00000000601

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Description

Scm polycomb group protein homolog 1 [Source:VGNC Symbol;Acc:VGNC:48878]

Location

Chromosome 1: 40,460,432-40,619,398 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 6 transcripts (splice variants), 218 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000104277.1	SCMH1-205	1983	660aa	ENSPTRP00000072781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XYD3 K7DDS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000089727.1	SCMH1-201	3136	577aa	ENSPTRP00000085391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8LZ52 A0A6D2WU75	-
ENSPTRT00000105779.1	SCMH1-202	3065	591aa	ENSPTRP00000073874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8LZ50 A0A6D2XEB7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000065274.3	SCMH1-204	2930	645aa	ENSPTRP00000056840.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RC67	-
ENSPTRT00000097381.1	SCMH1-203	2732	480aa	ENSPTRP00000083787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T3H2 A0A6D2XMR5	-
ENSPTRT00000100360.1	SCMH1-206	1947	648aa	ENSPTRP00000062104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RCG7 A0A6D2W5X5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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