Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM39 ENSPTRG00000017923

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Description

tripartite motif containing 39 [Source:VGNC Symbol;Acc:VGNC:53445]

Location

Chromosome 6: 30,551,952-30,571,745 forward strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 4 transcripts (splice variants), 125 orthologues and 87 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000057537.4	TRIM39-201	3795	518aa	ENSPTRP00000050429.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1XHU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000095404.1	TRIM39-202	3682	488aa	ENSPTRP00000065972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7BL16	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000033096.6	TRIM39-203	1512	503aa	ENSPTRP00000030577.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QSM1	-
ENSPTRT00000033095.6	TRIM39-204	1185	162aa	ENSPTRP00000030576.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QSM0	-

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Summary

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