Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
- Variant table
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- Structural variants
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ID History
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Gene: CNOT4 ENSPTRG00000019727

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Description

CCR4-NOT transcription complex subunit 4 [Source:VGNC Symbol;Acc:VGNC:7368]

Location

Chromosome 7: 139,925,917-140,002,481 reverse strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 6 transcripts (splice variants) and 240 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000036554.7	CNOT4-201	3229	712aa	ENSPTRP00000033796.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y3K6 H2QVF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000106039.1	CNOT4-205	4610	575aa	ENSPTRP00000077695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SL52 A0A6D2XHG4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000109364.1	CNOT4-202	2937	642aa	ENSPTRP00000088241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W152 K7B4J8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000088821.1	CNOT4-204	1302	433aa	ENSPTRP00000084639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T5W6 A0A6D2WWX2	-
ENSPTRT00000081814.1	CNOT4-206	963	320aa	ENSPTRP00000079121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SQ81	-
ENSPTRT00000078927.1	CNOT4-203	507	168aa	ENSPTRP00000091916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TSG9	-

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Summary

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