Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS41 ENSPTRG00000019104

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Description

VPS41 subunit of HOPS complex [Source:VGNC Symbol;Acc:VGNC:8787]

Location

Chromosome 7: 37,947,789-38,129,442 reverse strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 4 transcripts (splice variants) and 208 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000087036.1	VPS41-201	3309	854aa	ENSPTRP00000074062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SC42 A0A6D2W0G8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000035298.5	VPS41-202	2490	829aa	ENSPTRP00000032633.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XJV3 H2QUG3	-
ENSPTRT00000099722.1	VPS41-204	2448	815aa	ENSPTRP00000070418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S1F4	-
ENSPTRT00000092430.1	VPS41-203	2397	798aa	ENSPTRP00000081850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SXY2	-

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Summary

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