Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ATG16L1 ENSPTRG00000013051

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Description

autophagy related 16 like 1 [Source:VGNC Symbol;Acc:VGNC:10577]

Location

Chromosome 2B: 124,323,743-124,367,808 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 5 transcripts (splice variants), 206 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100084.1	ATG16L1-201	3448	624aa	ENSPTRP00000087896.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TGB3 A0A6D2Y0Y5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000024197.5	ATG16L1-202	3397	607aa	ENSPTRP00000022319.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WNP9 H2QJM7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000107144.1	ATG16L1-203	3340	588aa	ENSPTRP00000090054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XT35 K7A431	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000077670.1	ATG16L1-204	2908	444aa	ENSPTRP00000071877.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S4W7 A0A6D2XIT2	-
ENSPTRT00000101549.1	ATG16L1-205	1824	607aa	ENSPTRP00000078820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SPC6	-

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Summary

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