Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SP140L ENSPTRG00000013011

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Description

SP140 nuclear body protein like [Source:VGNC Symbol;Acc:VGNC:2862]

Location

Chromosome 2B: 121,401,862-121,501,007 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 6 transcripts (splice variants), 219 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000024126.5	SP140L-203	1743	580aa	ENSPTRP00000022251.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XAD8 H2QJK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000097412.1	SP140L-202	2808	555aa	ENSPTRP00000087112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TE23 A0A6D2W8W4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000105980.1	SP140L-201	2704	520aa	ENSPTRP00000082753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T1M3 A0A6D2WBF6	-
ENSPTRT00000079501.1	SP140L-206	1725	574aa	ENSPTRP00000084096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4E3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000067486.3	SP140L-205	1695	564aa	ENSPTRP00000059073.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RDL7	-
ENSPTRT00000090406.1	SP140L-204	1677	558aa	ENSPTRP00000078324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SMR4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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