Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TNRC6C ENSPTRG00000009699

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Description

trinucleotide repeat containing adaptor 6C [Source:VGNC Symbol;Acc:VGNC:48949]

Location

Chromosome 17: 77,603,873-77,711,793 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000097232.1	TNRC6C-203	5832	1943aa	ENSPTRP00000084787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T6F7 A0A6D2Y3T5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000096737.1	TNRC6C-201	9751	1725aa	ENSPTRP00000063588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8K7Q4 A0A6D2X2N6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000104822.1	TNRC6C-202	9643	1689aa	ENSPTRP00000087691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8K7Q0 A0A6D2XQM4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000017804.6	TNRC6C-204	5763	1920aa	ENSPTRP00000016495.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QDY9	-

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Summary

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