Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: BRCA1 ENSPTRG00000009236

.

Description

BRCA1 DNA repair associated [Source:VGNC Symbol;Acc:VGNC:10506]

Location

Chromosome 17: 14,445,006-14,526,136 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 7 transcripts (splice variants) and 199 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000078560.1	BRCA1-204	5655	1884aa	ENSPTRP00000070120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZS7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000016988.5	BRCA1-201	7288	1863aa	ENSPTRP00000015727.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QD46	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000082280.1	BRCA1-206	6360	175aa	ENSPTRP00000072459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S5Z7	-
ENSPTRT00000082138.1	BRCA1-205	2166	721aa	ENSPTRP00000075514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEV2	-
ENSPTRT00000108686.1	BRCA1-203	2100	699aa	ENSPTRP00000091849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TRH8	-
ENSPTRT00000109258.1	BRCA1-202	522	173aa	ENSPTRP00000075595.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SF32 A0A6D2Y2K8	-
ENSPTRT00000101565.1	BRCA1-207	291	96aa	ENSPTRP00000066971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RQP1 A0A6D2WSH4	-

.

Summary

.

.