Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: APOD ENSPTRG00000030011

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Description

apolipoprotein D [Source:VGNC Symbol;Acc:VGNC:1737]

Location

Chromosome 3: 199,931,094-199,946,630 reverse strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 4 transcripts (splice variants) and 410 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000089264.1	APOD-203	646	215aa	ENSPTRP00000080336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3STN5 A0A6D2X523	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000057937.4	APOD-201	1142	189aa	ENSPTRP00000050871.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W348 H2R7U9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000104158.1	APOD-202	573	190aa	ENSPTRP00000068251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RU55	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000098723.1	APOD-204	327	108aa	ENSPTRP00000087792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TEV7 A0A6D2WMK8	-

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Summary

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